Principles of Computational Cell Biology

2nd Edition 2019

Here you can find additional data files to work on the problems presented in the 2nd edition (2019) of Principles of Computational Cell Biology by Prof. Dr. Volkhard Helms.

For the supplemental files for the first edition, go to:
Book, 1st edition: additional data files

Contact

In case of problems or questions about this page please contact the author Prof. Dr. Volkhard Helms at volkhard.helms@bioinformatik.uni-saarland.de

Chapter 2

Problem 3

• construct.py
• map-dxdy.txt
• map-rot-dxdy.txt
• map.rot.dat.txt
• map.dat.txt
• dat.txt

Chapter 4

Problem 1

• AbstractNetwork.py
• Node.py
• RandomNetwork.py

Problem 2

• DegreeDistribution.py
• Tools.py
• createAndPlotNetworks.py

Problem 6

• 11309.txt
• 2287.txt
• dog.txt
• sfnet.txt
• square.txt
• star.txt
• star2.txt

Chapter 5

Problem 1

• Exp1.txt
• Exp2.txt
• GoldNeg.txt
• GoldPos.txt

Problem 3

• test-small.txt

Chapter 6

Problem 4

• bind-readme.txt

Problem 10

• testNetz.txt

Problem 11

• interaction-10116.txt
• interaction-1773.txt
• interaction-2190.txt
• interaction-83333.txt
• interaction-83541.txt
• interaction-85962.txt

Problem 12

• sfnetz-1000.txt

Problem 13

• HighSociety.txt
• societyPositions.txt

Problem 15

• SI-1.zip
• SI-2.zip
• SI-3.zip

Chapter 8

Problem 2

• WS16-Assign2.csv

Problem 3

• yeast_cell_cycle.txt

Problem 4

• expr_data.csv

Problem 5

• sine_waved.csv

Problem 7

• WS16-Assign5.csv

Chapter 9

Problem 2

• expr_H1hESC.gtf
• TF_target-map.txt

Chapter 11

Problem 1

• TCGA-BH-A1FH.txt

Problem 2

• ms_toy.txt

Problem 3

• methylation.csv

Problem 4

• test_data.csv
• train_data.csv