Bioinformatics 3

Tutors

Pratiti Bhadra, Andreas Denger, Thorsten Will, N.N.

Lecture:

Monday, 2:15 pm - 4:00 pm and Friday, 1:15 pm - 3:00 pm, building E2 1, room 007

Tutorial:

Monday, 12 pm - 2 pm, E2 1, room 007

Exam:

to be announced

Re-exam

to be announced

Requirements:

Familiarity with contents of Bioinformatik I and II. The students will have to complete programming assignments with Python. This course can be taken as part of the Master program Bioinformatics.

Content:

The course will cover methodological aspects of integrated biology and systems biology:

  • protein-protein interaction networks (mathematical graphs, Bayesian networks)
  • analysis of protein complexes (density fitting, Fourier transformation)
  • transcriptional regulatory networks (Boolean networks) including epigenetic processes and micro RNAs
  • dynamic simulation of cellular processes (differential equation solvers, stochastic simulations)
  • metabolic networks (linear algebra)

Schein/Certification:

Students need to pass the written final exam that will be scheduled near the end of the winter semester or the re-exam that will be scheduled at the beginning of the following summer semester.

Condition for participation in the final exam:

At least half of the points of the assignments. Solutions have to be returned at the beginning of the following Friday`s lecture. In addition each student has to solve one of these problems on the blackboard.

Textbook:

V. Helms, Principles of Computational Cell Biology, Wiley (2019)

Leistungspunkte/Credits:

9 (4 V + 2 Ü)

Language

This course is taught in English language.

Lectures:

 

 

Lecture Slides (pdf) Slides (ppt) Assignments Supplements
Lecture 1, October 18  pdf      
Lecture 2, October 21        
Lecture 3, October 25        
Lecture 4, October 28        
Lecture 5, November 4        
Lecture 6, November 8        
Lecture 7, November 11        
Lecture 8, November 15        
Lecture 9, November 18        
Lecture 10, November 22        
Lecture 11, November 25        
Lecture 12, November 29        
Lecture 13, December 2        
Lecture 14, December 6        
Lecture 15, December 9        
Lecture 16, December 13        
Lecture 17, December 16        
Lecture 18, January 6        
Lecture 19, January 10        
Lecture 20, January 13        
Lecture 21, January 17        
Lecture 22, January 20        
Lecture 23, January 24        
Lecture 24, January 27        
Lecture 25, January 31        
 Lecture 26, February 3