Lecturer:
Tutors
Markus Hollander, Trang Do Hoang Thu, Andreas Denger, Dr. Pratiti Bhadra
Lecture:
Tuesday and Thursday, 2:15 pm – 4:00 pm, online via MS Teams
Tutorial:
Thursday, 12:00 -2:00 pm, online via MS Teams
Information:
For organizational reasons, if you want to participate, please register by email to Kerstin Gronow-Pudelek.
Exam:
Tuesday, August 10th, 10:00 am – 1:00 pm, lecture halls 002 and 001, building E1 3
Results of the written exam.
The exam review will take place on Thursday, August 26, 2021, from 10 am to 12 noon in E2 1, room 314.
Re-exam
The written re-exam will take place on Friday, October 22nd, 2021, 2:00 pm – 5:00 pm, HS 002 in E1 3.
Please regard that registration at LSF until October 15th, 2021, is mandatory.
Results of the re-exam.
Requirements:
Familiarity with contents of Bioinformatik I and II. The students will have to complete programming assignments e.g. with Python. This course can be taken as part of the Master program Bioinformatics.
Content:
The course will cover methodological aspects of integrated biology and systems biology:
- protein-protein interaction networks (mathematical graphs, Bayesian networks)
- analysis of protein complexes (density fitting, Fourier transformation)
- transcriptional regulatory networks (Boolean networks) including epigenetic modifications and micro RNAs
- dynamic simulation of cellular processes (differential equation solvers, stochastic simulations)
- metabolic networks (linear algebra)
Schein/Certification:
Students need to pass the written final exam that will be scheduled near the end of the summer semester or the re-exam that will be scheduled at the beginning of the following winter semester.
Condition for participation in the final exam:
At least half of the points of the assignments. Solutions have to be returned at the beginning of the following Thursday`s lecture. In addition each student has to solve one of these problems on the blackboard.
Textbook:
V. Helms, Principles of Computational Cell Biology, Wiley (2019)
Leistungspunkte/Credits:
9 (4 V + 2 Ü)
Language
This course is taught in English language.
Lectures:
The lecture slides are available in the Microsoft Teams group.
| Lecture | Assignments | Supplements |
| Lecture 1, April 13 | ||
| Lecture 2, April 15 | Assignment 1 | Supplement 1 Solution Template Solution Template (LaTeX) |
| Lecture 3, April 20 | ||
| Lecture 4, April 22 | Assignment 2 | Supplement 2 |
| Lecture 5, April 27 | ||
| Lecture 6, April 29 | Assignment 3 | Supplement 3 |
| Lecture 7, May 4 | ||
| Lecture 8, May 6 | Assignment 4 | Supplement 4 |
| Lecture 9, May 11 | ||
| Lecture 10, May 18 | ||
| Lecture 11, May 20 | Assignment 5 | Supplement 5 |
| Lecture 12, May 25 | ||
| Lecture 13, May 27 | Assignment 6 | Supplement 6 |
| Lecture 14, June 1 | ||
| Lecture 15, June 8 | Assignment 7 | Supplement 7 |
| Lecture 16, June 10 | ||
| Lecture 17, June 15 | Assignment 8 | Supplement 8 |
| Lecture 18, June 17 | ||
| Lecture 19, June 22 | Assignment 9
to submit by June 29th, 12:00 |
|
| Lecture 20, June 24 | ||
| Lecture 21, June 29 | ||
| Lecture 22, July 1 | Assignment 10 | |
| Lecture 23, July 6 | ||
| Lecture 23, July 8 | ||
| Lecture 24, July 13 | ||
| Lecture 25, July 15 | ||