Monday, 2:15 pm - 4:00 pm and Friday, 1:15 pm - 3:00 pm, building E2 1, room 007
Monday, 12:00 pm - 2:00 pm, E2 1, room 007
Monday, March 7th, 10:00 am - 01:00 pm, building E1 3, lecture hall 001 - see slide 2 of lecture V24
Please find the results of the exam here.
The re-exam will take place on Friday, April 22nd, 10:00 am in building E2.1, room 007.
Familiarity with contents of Bioinformatik I and II. The students will have to complete programming assignments with Python. This course can be taken as part of the Master program Bioinformatics.
The course will cover methodological aspects of integrated biology and systems biology:
- protein-protein interaction networks (mathematical graphs, Bayesian networks)
- analysis of protein complexes (density fitting, Fourier transformation)
- transcriptional regulatory networks (Boolean networks) including epigenetic processes and micro RNAs
- dynamic simulation of cellular processes (differential equation solvers, stochastic simulations)
- metabolic networks (linear algebra)
Students need to pass the written final exam that will be scheduled near the end of the winter semester or the re-exam that will be scheduled at the beginning of the following summer semester.
Condition for participation in the final exam:
At least half of the points of the assignments. Solutions have to be returned at the beginning of the following Friday´s lecture. In addition each student has to solve one of these problems on the blackboard.
V. Helms, Principles of Computational Cell Biology, Wiley (2008)
9 (4 V + 2 Ü)
This course is taught in English language.
|Lectures||Slides (pdf)||Slides (ppt)||Assignments||Supplements|
|Lecture 1, October 23||pptx||Assignment 1||Supplement 1|
|Lecture 2, October 26||ppt|
|Lecture 3, October 30||ppt||Assignment 2||Supplement 2|
|November 2||No lecture|
|Lecture 4, November 6||ppt||Assignment 3||Supplement 3|
|Lecture 5, November 9||ppt|
|Lecture 6, November 13||ppt||Assignment 4||Supplement 4|
|Lecture 7, November 16||ppt|
|Lecture 8, November 20||ppt||Assignment 5||Supplement 5|
|Lecture 9, November 23||ppt|
|Lecture 10, November 27||ppt||Assignment 6|
|Lecture 11, November 30||ppt|
|Lecture 12, December 4||ppt||Assignment 7||Supplement 7|
|Lecture 13, December 7||ppt|
|Lecture 14, December 11||ppt||Assignment 8|
|Lecture 15, December 14||ppt|
|Lecture 16, December 18||ppt||No assignment|
|Lecture 17, January 4||ppt||Assignment 9|
(due Jan. 15)
|Lecture 18, January 8||ppt|
|Lecture 19, January 11||ppt|
|Lecture 20, January 15||ppt||Assignment 10||Supplement 10|
|Lecture 21, January 18||ppt|
|Lecture 22, January 22||ppt|
|Lecture 23, January 25||ppt|
|Lecture 24, January 29||ppt||see slide 2 for|