Monday, 2:15 pm - 4:00 pm and Friday, 1:15 pm - 3:00 pm, building E2 1, room 007
Monday, 12 pm - 2 pm, E2 1, room 007
Friday, March 3rd, 10:00 am - 1:00 pm, building E2 1, room 007
Please find the results of the exam here.
Wednesday, April 26th, 2:00 pm - 5:00 pm, E2 1, room 007
Please find the results of the re-exam here.
Familiarity with contents of Bioinformatik I and II. The students will have to complete programming assignments with Python. This course can be taken as part of the Master program Bioinformatics.
The course will cover methodological aspects of integrated biology and systems biology:
- protein-protein interaction networks (mathematical graphs, Bayesian networks)
- analysis of protein complexes (density fitting, Fourier transformation)
- transcriptional regulatory networks (Boolean networks) including epigenetic processes and micro RNAs
- dynamic simulation of cellular processes (differential equation solvers, stochastic simulations)
- metabolic networks (linear algebra)
Students need to pass the written final exam that will be scheduled near the end of the winter semester or the re-exam that will be scheduled at the beginning of the following summer semester.
Condition for participation in the final exam:
At least half of the points of the assignments. Solutions have to be returned at the beginning of the following Friday`s lecture. In addition each student has to solve one of these problems on the blackboard.
V. Helms, Principles of Computational Cell Biology, Wiley (2008)
9 (4 V + 2 Ü)
This course is taught in English language.
|Lecture||Slides (pdf)||Slides (ppt)||Assignments||Supplements|
|Lecture 1, October 28||ppt||zip|
|Lecture 2, October 31||ppt|
|Lecture 3, November 4||ppt||zip|
|Lecture 4, November 7||ppt|
|Lecture 5, November 11||ppt||zip|
|Lecture 6, November 14||ppt|
|Lecture 7, November 18||ppt|
|Lecture 8, November 21||ppt|
|Lecture 9, November 25||ppt||zip|
|Lecture 10, November 28||ppt|
|Lecture 11, December 2||ppt|
|Lecture 12, December 5||ppt|
|Lecture 13, December 9||ppt||zip|
|Lecture 14, December 12||ppt|
|Lecture 15, December 16||ppt|
|Lecture 16, January 2||ppt|
|Lecture 17, January 6||ppt||bonus|
|Lecture 18, January 9||ppt|
|Lecture 19, January 13||ppt|
|Lecture 20, January 16||ppt|
|Lecture 21, January 20||ppt|
|Lecture 22, January 23||ppt||zip|
|Lecture 23, January 27||ppt|
|Lecture 24, January 30||ppt|
|Lecture 25, February 3||ppt|